J3_7JT3_009

3D structure

PDB id

7JT3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rotated 70S ribosome stalled on long mRNA with ArfB-1 and ArfB-2 bound in the A site (+9-IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7JT3_009 not in the Motif Atlas

Homologous match to J3_5J7L_044

Geometric discrepancy: 0.1047

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn in J3

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

7JT3|1|1|C|2091
7JT3|1|1|U|2092
7JT3|1|1|G|2093
*
7JT3|1|1|C|2196
7JT3|1|1|U|2197
7JT3|1|1|A|2198
7JT3|1|1|A|2199
7JT3|1|1|C|2200
*
7JT3|1|1|G|2223
7JT3|1|1|G|2224
7JT3|1|1|A|2225
7JT3|1|1|C|2226
7JT3|1|1|A|2227
7JT3|1|1|G|2228

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain b

50S ribosomal protein L2

Chain g

50S ribosomal protein L9

Chain x

50S ribosomal protein L28