J3_7JT3_020

3D structure

PDB id

7JT3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rotated 70S ribosome stalled on long mRNA with ArfB-1 and ArfB-2 bound in the A site (+9-IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUUG*CAG*CUUACG

Length

13 nucleotides

Bulged bases

7JT3|1|3|U|1212, 7JT3|1|3|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7JT3_020 not in the Motif Atlas

Homologous match to J3_4LFB_005

Geometric discrepancy: 0.2399

The information below is about J3_4LFB_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_82572.1

Basepair signature

cWW-tSH-tWW-F-cWW-tHW-F-F-cWW

Number of instances in this motif group

2

Unit IDs

7JT3|1|3|C|990
7JT3|1|3|U|991
7JT3|1|3|U|992
7JT3|1|3|G|993
*
7JT3|1|3|C|1045
7JT3|1|3|A|1046
7JT3|1|3|G|1047
*
7JT3|1|3|C|1210
7JT3|1|3|U|1211
7JT3|1|3|U|1212
7JT3|1|3|A|1213
7JT3|1|3|C|1214
7JT3|1|3|G|1215

Current chains

Chain 3

16S ribosomal RNA

Nearby chains

Chain 9

Peptidyl-tRNA hydrolase ArfB

Chain S

30S ribosomal protein S14