J3_7K50_003

3D structure

PDB id

7K50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre-translocation non-frameshifting(CCA-A) complex (Structure I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

7K50|1|1|U|686, 7K50|1|1|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7K50_003 not in the Motif Atlas

Homologous match to J3_7RQB_004

Geometric discrepancy: 0.202

The information below is about J3_7RQB_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_39238.4

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

7K50|1|1|U|683
7K50|1|1|G|684
7K50|1|1|A|685
7K50|1|1|U|686
7K50|1|1|C|687
7K50|1|1|U|688
7K50|1|1|A|689
*
7K50|1|1|U|773
7K50|1|1|G|774
7K50|1|1|G|775
*
7K50|1|1|C|791
7K50|1|1|A|792
7K50|1|1|A|793
7K50|1|1|A|794

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L34

Chain b

50S ribosomal protein L2