3D structure

PDB id
7K52 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Near post-translocated non-frameshifting(CCA-A) complex with EF-G and GDPCP (Structure III)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
CAAUG*CGUAGUCC*GUCG
Length
17 nucleotides
Bulged bases
7K52|1|3|U|1240, 7K52|1|3|C|1302
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7K52_027 not in the Motif Atlas
Homologous match to J3_5J7L_011
Geometric discrepancy: 0.2753
The information below is about J3_5J7L_011
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_37047.6
Basepair signature
cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F
Number of instances in this motif group
4

Unit IDs

7K52|1|3|C|1237
7K52|1|3|A|1238
7K52|1|3|A|1239
7K52|1|3|U|1240
7K52|1|3|G|1241
*
7K52|1|3|C|1296
7K52|1|3|G|1297
7K52|1|3|U|1298
7K52|1|3|A|1299
7K52|1|3|G|1300
7K52|1|3|U|1301
7K52|1|3|C|1302
7K52|1|3|C|1303
*
7K52|1|3|G|1334
7K52|1|3|U|1335
7K52|1|3|C|1336
7K52|1|3|G|1337

Current chains

Chain 3
16S ribosomal RNA

Nearby chains

Chain 6
Transfer RNA; tRNA
Chain L
30S ribosomal protein S7
Chain R
30S ribosomal protein S13

Coloring options:


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