3D structure

PDB id
7K54 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mid-translocated +1-frameshifting(CCC-A) complex with EF-G and GDPCP (Structure II-FS)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CUUG*CGGAG*CGUUAAG
Length
16 nucleotides
Bulged bases
7K54|1|3|U|871, 7K54|1|3|A|873
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7K54_018 not in the Motif Atlas
Homologous match to J3_5J7L_004
Geometric discrepancy: 0.1223
The information below is about J3_5J7L_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_85054.4
Basepair signature
cWW-tWW-tHS-F-cWW-tHS-cWW-F
Number of instances in this motif group
3

Unit IDs

7K54|1|3|C|826
7K54|1|3|U|827
7K54|1|3|U|828
7K54|1|3|G|829
*
7K54|1|3|C|857
7K54|1|3|G|858
7K54|1|3|G|859
7K54|1|3|A|860
7K54|1|3|G|861
*
7K54|1|3|C|868
7K54|1|3|G|869
7K54|1|3|U|870
7K54|1|3|U|871
7K54|1|3|A|872
7K54|1|3|A|873
7K54|1|3|G|874

Current chains

Chain 3
16S ribosomal RNA

Nearby chains

Chain G
30S ribosomal protein S2
Chain M
30S ribosomal protein S8
Chain Z
30S ribosomal protein S21

Coloring options:


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