J3_7K5I_008

3D structure

PDB id

7K5I (explore in PDB, NAKB, or RNA 3D Hub)

Description

SARS-COV-2 nsp1 in complex with human 40S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCGGAC*GGGUG*UUAGAUG

Length

18 nucleotides

Bulged bases

7K5I|1|2|G|1274, 7K5I|1|2|G|1507

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7K5I_008 not in the Motif Atlas

Homologous match to J3_4V88_038

Geometric discrepancy: 0.1217

The information below is about J3_4V88_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_75993.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

7K5I|1|2|C|1272
7K5I|1|2|C|1273
7K5I|1|2|G|1274
7K5I|1|2|G|1275
7K5I|1|2|A|1276
7K5I|1|2|C|1277
*
7K5I|1|2|G|1320
7K5I|1|2|G|1321
7K5I|1|2|G|1322
7K5I|1|2|U|1323
7K5I|1|2|G|1324
*
7K5I|1|2|U|1504
7K5I|1|2|U|1505
7K5I|1|2|A|1506
7K5I|1|2|G|1507
7K5I|1|2|A|1508
7K5I|1|2|U|1509
7K5I|1|2|G|1510

Current chains

Chain 2

40S ribosomal rRNA18S

Nearby chains

Chain K

40S ribosomal protein S10

Chain d

40S ribosomal protein S29

Chain f

40S ribosomal protein S27a