J3_7K5I_012
3D structure
- PDB id
- 7K5I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- SARS-COV-2 nsp1 in complex with human 40S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CACUG*CGUGAUGG*CGAG
- Length
- 17 nucleotides
- Bulged bases
- 7K5I|1|2|U|1535
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7K5I_012 not in the Motif Atlas
- Homologous match to J3_8C3A_044
- Geometric discrepancy: 0.1361
- The information below is about J3_8C3A_044
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37047.4
- Basepair signature
- cWW-cSS-cSH-F-tWH-F-cWW-cSH-F-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
7K5I|1|2|C|1532
7K5I|1|2|A|1533
7K5I|1|2|C|1534
7K5I|1|2|U|1535
7K5I|1|2|G|1536
*
7K5I|1|2|C|1597
7K5I|1|2|G|1598
7K5I|1|2|U|1599
7K5I|1|2|G|1600
7K5I|1|2|A|1601
7K5I|1|2|U|1602
7K5I|1|2|G|1603
7K5I|1|2|G|1604
*
7K5I|1|2|C|1635
7K5I|1|2|G|1636
7K5I|1|2|A|1637
7K5I|1|2|G|1638
Current chains
- Chain 2
- 40S ribosomal rRNA18S
Nearby chains
- Chain F
- 40S ribosomal protein S5
- Chain S
- 40S ribosomal protein S18
- Chain T
- 40S ribosomal protein S19
- Chain Z
- 40S ribosomal protein S25
Coloring options: