J3_7KVU_001

3D structure

PDB id

7KVU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Squash RNA aptamer in complex with DFHBI-1T

Experimental method

X-RAY DIFFRACTION

Resolution

2.68 Å

Loop

Sequence

CAAGGUGAG*UUAGGAUAGG*CGG

Length

22 nucleotides

Bulged bases

7KVU|1|G|A|11, 7KVU|1|G|A|17

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7KVU_001 not in the Motif Atlas

Geometric match to J3_7KVT_001

Geometric discrepancy: 0.0281

The information below is about J3_7KVT_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_00458.1

Basepair signature

cWW-F-F-cSS-F-tWH-cSS-F-tHW-F-F-cWW-F-F-cWW

Number of instances in this motif group

1

Unit IDs

7KVU|1|G|C|10
7KVU|1|G|A|11
7KVU|1|G|A|12
7KVU|1|G|G|13
7KVU|1|G|G|14
7KVU|1|G|U|15
7KVU|1|G|G|16
7KVU|1|G|A|17
7KVU|1|G|G|18
*
7KVU|1|G|U|38
7KVU|1|G|U|39
7KVU|1|G|A|40
7KVU|1|G|G|41
7KVU|1|G|G|42
7KVU|1|G|A|43
7KVU|1|G|U|44
7KVU|1|G|A|45
7KVU|1|G|G|46
7KVU|1|G|G|47
*
7KVU|1|G|C|72
7KVU|1|G|G|73
7KVU|1|G|G|74

Current chains

Chain G

Squash RNA aptamer

Nearby chains