J3_7KWG_021

3D structure

PDB id

7KWG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 30S ribosomal subunit in presence of spermidine

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

CUUGACAU*ACAG*CUUAUG

Length

18 nucleotides

Bulged bases

7KWG|1|a|U|1223, 7KWG|1|a|U|1225

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7KWG_021 not in the Motif Atlas

Homologous match to J3_6CZR_063

Geometric discrepancy: 0.2652

The information below is about J3_6CZR_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.1

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

3

Unit IDs

7KWG|1|a|C|1000
7KWG|1|a|U|1001
7KWG|1|a|U|1002
7KWG|1|a|G|1003
7KWG|1|a|A|1004
7KWG|1|a|C|1005
7KWG|1|a|A|1006
7KWG|1|a|U|1007
*
7KWG|1|a|A|1056
7KWG|1|a|C|1057
7KWG|1|a|A|1058
7KWG|1|a|G|1059
*
7KWG|1|a|C|1221
7KWG|1|a|U|1222
7KWG|1|a|U|1223
7KWG|1|a|A|1224
7KWG|1|a|U|1225
7KWG|1|a|G|1226

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain n

30S ribosomal protein S14 type Z