J3_7LH5_054

3D structure

PDB id

7LH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with plazomicin, mRNA and tRNAs

Experimental method

X-RAY DIFFRACTION

Resolution

3.27 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

7LH5|1|AA|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7LH5_054 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.2007

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28881.1

Basepair signature

cWW-tWH-F-F-cWW-cWW-F-F-F-cWS-cWW

Number of instances in this motif group

2

Unit IDs

7LH5|1|AA|C|990
7LH5|1|AA|U|991
7LH5|1|AA|U|992
7LH5|1|AA|G|993
7LH5|1|AA|A|994
7LH5|1|AA|C|995
7LH5|1|AA|A|996
7LH5|1|AA|U|997
*
7LH5|1|AA|A|1044
7LH5|1|AA|C|1045
7LH5|1|AA|A|1046
7LH5|1|AA|G|1047
*
7LH5|1|AA|C|1210
7LH5|1|AA|U|1211
7LH5|1|AA|U|1212
7LH5|1|AA|A|1213
7LH5|1|AA|C|1214
7LH5|1|AA|G|1215

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AC

30S ribosomal protein S3

Chain AN

30S ribosomal protein S14 type Z