J3_7LH5_067
3D structure
- PDB id
- 7LH5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with plazomicin, mRNA and tRNAs
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.27 Å
Loop
- Sequence
- CUCG*CGAUAGCGCACCAGUAC*GGAAAG
- Length
- 27 nucleotides
- Bulged bases
- 7LH5|1|DA|U|448, 7LH5|1|DA|C|456
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7LH5_067 not in the Motif Atlas
- Homologous match to J3_9DFE_003
- Geometric discrepancy: 0.0608
- The information below is about J3_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
7LH5|1|DA|C|32
7LH5|1|DA|U|33
7LH5|1|DA|C|34
7LH5|1|DA|G|35
*
7LH5|1|DA|C|445
7LH5|1|DA|G|446
7LH5|1|DA|A|447
7LH5|1|DA|U|448
7LH5|1|DA|A|449
7LH5|1|DA|G|450
7LH5|1|DA|C|451
7LH5|1|DA|G|452
7LH5|1|DA|C|453
7LH5|1|DA|A|454
7LH5|1|DA|C|455
7LH5|1|DA|C|456
7LH5|1|DA|A|457
7LH5|1|DA|G|458
7LH5|1|DA|U|459
7LH5|1|DA|A|460
7LH5|1|DA|C|461
*
7LH5|1|DA|G|468
7LH5|1|DA|G|469
7LH5|1|DA|A|470
7LH5|1|DA|A|471
7LH5|1|DA|A|472
7LH5|1|DA|G|473
Current chains
- Chain DA
- 23S ribosomal RNA
Nearby chains
- Chain D7
- 50S ribosomal protein L34
- Chain DF
- 50S ribosomal protein L4
- Chain DU
- 50S ribosomal protein L20
- Chain DX
- 50S ribosomal protein L23
Coloring options: