J3_7LS1_009

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAAG*C(B9H)AUAUC*GUC

Length

14 nucleotides

Bulged bases

7LS1|1|A2|U|2543, 7LS1|1|A2|A|2544

QA status

Modified nucleotides: B9H

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7LS1_009 not in the Motif Atlas

Homologous match to J3_8C3A_007

Geometric discrepancy: 0.1101

The information below is about J3_8C3A_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_74051.1

Basepair signature

cWW-tSH-tWW-tHW-F-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

7LS1|1|A2|G|2157
7LS1|1|A2|A|2158
7LS1|1|A2|A|2159
7LS1|1|A2|G|2160
*
7LS1|1|A2|C|2540
7LS1|1|A2|B9H|2541
7LS1|1|A2|A|2542
7LS1|1|A2|U|2543
7LS1|1|A2|A|2544
7LS1|1|A2|U|2545
7LS1|1|A2|C|2546
*
7LS1|1|A2|G|2555
7LS1|1|A2|U|2556
7LS1|1|A2|C|2557

Current chains

Chain A2

28S rRNA

Nearby chains

Chain a2

60S ribosomal protein L34

Chain d2

60S ribosomal protein L37

Chain f2

60S ribosomal protein L39