J3_7LS1_011

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CGG*CUGAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7LS1_011 not in the Motif Atlas

Geometric match to J3_7A0S_009

Geometric discrepancy: 0.1667

The information below is about J3_7A0S_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17460.1

Basepair signature

cWW-tHH-cWW-F-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

7LS1|1|A2|C|3593
7LS1|1|A2|G|3594
7LS1|1|A2|G|3595
*
7LS1|1|A2|C|3724
7LS1|1|A2|U|3725
7LS1|1|A2|G|3726
7LS1|1|A2|A|3727
7LS1|1|A2|C|3728
*
7LS1|1|A2|G|3820
7LS1|1|A2|G|3821
7LS1|1|A2|A|3822
7LS1|1|A2|C|3823
7LS1|1|A2|A|3824
7LS1|1|A2|G|3825

Current chains

Chain A2

28S rRNA

Nearby chains

Chain B1

60S ribosomal protein L7a

Chain D2

60S ribosomal protein L8

Chain H1

60S ribosomal protein L15