J3_7LS1_023

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCAG*CCAGUAA*UGAUUAAG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7LS1_023 not in the Motif Atlas

Homologous match to J3_4V88_035

Geometric discrepancy: 0.2305

The information below is about J3_4V88_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.1

Basepair signature

cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7LS1|1|m2|C|1220
7LS1|1|m2|C|1221
7LS1|1|m2|A|1222
7LS1|1|m2|G|1223
*
7LS1|1|m2|C|1647
7LS1|1|m2|C|1648
7LS1|1|m2|A|1649
7LS1|1|m2|G|1650
7LS1|1|m2|U|1651
7LS1|1|m2|A|1652
7LS1|1|m2|A|1653
*
7LS1|1|m2|U|1675
7LS1|1|m2|G|1676
7LS1|1|m2|A|1677
7LS1|1|m2|U|1678
7LS1|1|m2|U|1679
7LS1|1|m2|A|1680
7LS1|1|m2|A|1681
7LS1|1|m2|G|1682

Current chains

Chain m2

28S rRNA

Nearby chains

Chain G3

40S ribosomal protein S28

Chain s2

40S ribosomal protein S5

Chain y2

40S ribosomal protein S16