J3_7LS1_026
3D structure
- PDB id
- 7LS1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome from mouse bound to eEF2 (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CCGGAC*GGGUG*UUAGAUG
- Length
- 18 nucleotides
- Bulged bases
- 7LS1|1|m2|G|1276, 7LS1|1|m2|G|1509
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7LS1_026 not in the Motif Atlas
- Homologous match to J3_4V88_038
- Geometric discrepancy: 0.1714
- The information below is about J3_4V88_038
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_75993.1
- Basepair signature
- cWW-tWH-F-F-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
7LS1|1|m2|C|1274
7LS1|1|m2|C|1275
7LS1|1|m2|G|1276
7LS1|1|m2|G|1277
7LS1|1|m2|A|1278
7LS1|1|m2|C|1279
*
7LS1|1|m2|G|1322
7LS1|1|m2|G|1323
7LS1|1|m2|G|1324
7LS1|1|m2|U|1325
7LS1|1|m2|G|1326
*
7LS1|1|m2|U|1506
7LS1|1|m2|U|1507
7LS1|1|m2|A|1508
7LS1|1|m2|G|1509
7LS1|1|m2|A|1510
7LS1|1|m2|U|1511
7LS1|1|m2|G|1512
Current chains
- Chain m2
- 28S rRNA
Nearby chains
- Chain H3
- 40S ribosomal protein S29
- Chain U3
- Ubiquitin-40S ribosomal protein S27a
- Chain m
- Elongation factor 2
- Chain v2
- 40S ribosomal protein S10
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