J3_7LS1_036

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GAGAAG*CC*GAAAAUC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7LS1_036 not in the Motif Atlas

Geometric match to J3_5J7L_069

Geometric discrepancy: 0.3091

The information below is about J3_5J7L_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.2

Basepair signature

cWW-F-cWW-F-tHH-F-tHS-tHS-cWW

Number of instances in this motif group

4

Unit IDs

7LS1|1|A2|G|2352
7LS1|1|A2|A|2353
7LS1|1|A2|G|2354
7LS1|1|A2|A|2355
7LS1|1|A2|A|2356
7LS1|1|A2|G|2357
*
7LS1|1|A2|C|2492
7LS1|1|A2|C|2493
*
7LS1|1|A2|G|2497
7LS1|1|A2|A|2498
7LS1|1|A2|A|2499
7LS1|1|A2|A|2500
7LS1|1|A2|A|2501
7LS1|1|A2|U|2502
7LS1|1|A2|C|2503

Current chains

Chain A2

28S rRNA

Nearby chains

Chain D2

60S ribosomal protein L8

Chain a2

60S ribosomal protein L34

Chain j2

60S ribosomal protein L37a