J3_7LS1_041

3D structure

PDB id

7LS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AGAUUAAG*CGCGCAAAU*AGU

Length

20 nucleotides

Bulged bases

7LS1|1|m2|A|46

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7LS1_041 not in the Motif Atlas

Homologous match to J3_8C3A_083

Geometric discrepancy: 0.1946

The information below is about J3_8C3A_083

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.2

Basepair signature

cWW-F-tWH-cSW-cWW-cWW-F-F-cSW-cWW

Number of instances in this motif group

5

Unit IDs

7LS1|1|m2|A|40
7LS1|1|m2|G|41
7LS1|1|m2|A|42
7LS1|1|m2|U|43
7LS1|1|m2|U|44
7LS1|1|m2|A|45
7LS1|1|m2|A|46
7LS1|1|m2|G|47
*
7LS1|1|m2|C|481
7LS1|1|m2|G|482
7LS1|1|m2|C|483
7LS1|1|m2|G|484
7LS1|1|m2|C|485
7LS1|1|m2|A|486
7LS1|1|m2|A|487
7LS1|1|m2|A|488
7LS1|1|m2|U|489
*
7LS1|1|m2|A|514
7LS1|1|m2|G|515
7LS1|1|m2|U|516

Current chains

Chain m2

28S rRNA

Nearby chains

Chain E3

40S ribosomal protein S23

Chain L3

40S ribosomal protein S9

Chain m

Elongation factor 2