J3_7LS2_019

3D structure

PDB id

7LS2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome from mouse bound to eEF2 (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AG*CGCAAAU*AGU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7LS2_019 not in the Motif Atlas

Geometric match to J3_8C3A_082

Geometric discrepancy: 0.157

The information below is about J3_8C3A_082

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.2

Basepair signature

cWW-F-cWW-F-F-cSW-F-cWW

Number of instances in this motif group

5

Unit IDs

7LS2|1|m2|A|40
7LS2|1|m2|G|41
*
7LS2|1|m2|C|483
7LS2|1|m2|G|484
7LS2|1|m2|C|485
7LS2|1|m2|A|486
7LS2|1|m2|A|487
7LS2|1|m2|A|488
7LS2|1|m2|U|489
*
7LS2|1|m2|A|514
7LS2|1|m2|G|515
7LS2|1|m2|U|516

Current chains

Chain m2

18S rRNA

Nearby chains

Chain E3

40S ribosomal protein S23

Chain L3

40S ribosomal protein S9

Chain m

Elongation factor 2