J3_7LS2_028
3D structure
- PDB id
- 7LS2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome from mouse bound to eEF2 (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UCUUAG*CGAGAC*GCAAUA
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7LS2_028 not in the Motif Atlas
- Homologous match to J3_4V88_039
- Geometric discrepancy: 0.1777
- The information below is about J3_4V88_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_47248.1
- Basepair signature
- cWW-F-F-F-F-F-tHH-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
7LS2|1|m2|U|1342
7LS2|1|m2|C|1343
7LS2|1|m2|U|1344
7LS2|1|m2|U|1345
7LS2|1|m2|A|1346
7LS2|1|m2|G|1347
*
7LS2|1|m2|C|1386
7LS2|1|m2|G|1387
7LS2|1|m2|A|1388
7LS2|1|m2|G|1389
7LS2|1|m2|A|1390
7LS2|1|m2|C|1391
*
7LS2|1|m2|G|1483
7LS2|1|m2|C|1484
7LS2|1|m2|A|1485
7LS2|1|m2|A|1486
7LS2|1|m2|U|1487
7LS2|1|m2|A|1488
Current chains
- Chain m2
- 18S rRNA
Nearby chains
- Chain C3
- 40S ribosomal protein S20
- Chain H3
- 40S ribosomal protein S29
- Chain J3
- 40S ribosomal protein S2
- Chain q2
- 40S ribosomal protein S3
- Chain y2
- 40S ribosomal protein S16
- Chain z2
- 40S ribosomal protein S17
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