J3_7LS2_029
3D structure
- PDB id
- 7LS2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome from mouse bound to eEF2 (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UG*UGUC*GAUAA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7LS2_029 not in the Motif Atlas
- Homologous match to J3_8C3A_085
- Geometric discrepancy: 0.2091
- The information below is about J3_8C3A_085
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76043.2
- Basepair signature
- cWW-F-F-F-F-tSS-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
7LS2|1|m2|U|1352
7LS2|1|m2|G|1353
*
7LS2|1|m2|U|1362
7LS2|1|m2|G|1363
7LS2|1|m2|U|1364
7LS2|1|m2|C|1365
*
7LS2|1|m2|G|1377
7LS2|1|m2|A|1378
7LS2|1|m2|U|1379
7LS2|1|m2|A|1380
7LS2|1|m2|A|1381
Current chains
- Chain m2
- 18S rRNA
Nearby chains
- Chain J3
- 40S ribosomal protein S2
- Chain o2
- 40S ribosomal protein SA
- Chain z2
- 40S ribosomal protein S17
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