J3_7LV0_019

3D structure

PDB id

7LV0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre-translocation rotated ribosome +1-frameshifting(CCC-A) complex (Structure Irot-FS)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGGA*UAC*GGAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7LV0_019 not in the Motif Atlas

Homologous match to J3_4LFB_003

Geometric discrepancy: 0.1135

The information below is about J3_4LFB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_52655.4

Basepair signature

cWW-tSH-cWW-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

7LV0|1|3|U|943
7LV0|1|3|G|944
7LV0|1|3|G|945
7LV0|1|3|A|946
*
7LV0|1|3|U|1235
7LV0|1|3|A|1236
7LV0|1|3|C|1237
*
7LV0|1|3|G|1337
7LV0|1|3|G|1338
7LV0|1|3|A|1339
7LV0|1|3|A|1340

Current chains

Chain 3

16S ribosomal RNA

Nearby chains

Chain 6

Transfer RNA; tRNA

Chain N

30S ribosomal protein S9

Chain R

30S ribosomal protein S13