J3_7M4W_026

3D structure

PDB id

7M4W (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-Eravacycline complex: 70S Empty

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAUAGAUCC

Length

28 nucleotides

Bulged bases

7M4W|1|A|U|503, 7M4W|1|A|U|507

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7M4W_026 not in the Motif Atlas

Homologous match to J3_4WF9_011

Geometric discrepancy: 0.2344

The information below is about J3_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.1

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

7M4W|1|A|G|37
7M4W|1|A|C|38
*
7M4W|1|A|G|473
7M4W|1|A|C|474
7M4W|1|A|G|475
7M4W|1|A|A|476
7M4W|1|A|A|477
7M4W|1|A|A|478
7M4W|1|A|A|479
7M4W|1|A|G|480
7M4W|1|A|A|481
7M4W|1|A|A|482
7M4W|1|A|C|483
*
7M4W|1|A|G|495
7M4W|1|A|A|496
7M4W|1|A|G|497
7M4W|1|A|U|498
7M4W|1|A|G|499
7M4W|1|A|A|500
7M4W|1|A|A|501
7M4W|1|A|A|502
7M4W|1|A|U|503
7M4W|1|A|A|504
7M4W|1|A|G|505
7M4W|1|A|A|506
7M4W|1|A|U|507
7M4W|1|A|C|508
7M4W|1|A|C|509

Current chains

Chain A

23s ribosomal RNA

Nearby chains

Chain P

50S ribosomal protein L20

Chain R

50S ribosomal protein L22

Chain T

50S ribosomal protein L24