J3_7M4X_017

3D structure

PDB id

7M4X (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-Eravacycline complex: 70S with P-tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

CUAG*CGCAG*CGAUAAG

Length

16 nucleotides

Bulged bases

7M4X|1|a|U|868, 7M4X|1|a|A|870

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7M4X_017 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.1483

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

7M4X|1|a|C|823
7M4X|1|a|U|824
7M4X|1|a|A|825
7M4X|1|a|G|826
*
7M4X|1|a|C|854
7M4X|1|a|G|855
7M4X|1|a|C|856
7M4X|1|a|A|857
7M4X|1|a|G|858
*
7M4X|1|a|C|865
7M4X|1|a|G|866
7M4X|1|a|A|867
7M4X|1|a|U|868
7M4X|1|a|A|869
7M4X|1|a|A|870
7M4X|1|a|G|871

Current chains

Chain a

16s Ribosomal RNA

Nearby chains

Chain b

30S ribosomal protein S2

Chain h

30S ribosomal protein S8

Chain u

30S ribosomal protein S21