J3_7M4Z_008

3D structure

PDB id

7M4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-Eravacycline complex: 70S with hpf

Experimental method

ELECTRON MICROSCOPY

Resolution

2.92 Å

Loop

Sequence

CUG*CUAAC*GGACCG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7M4Z_008 not in the Motif Atlas

Homologous match to J3_5J7L_044

Geometric discrepancy: 0.0857

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn in J3

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

7M4Z|1|A|C|2087
7M4Z|1|A|U|2088
7M4Z|1|A|G|2089
*
7M4Z|1|A|C|2192
7M4Z|1|A|U|2193
7M4Z|1|A|A|2194
7M4Z|1|A|A|2195
7M4Z|1|A|C|2196
*
7M4Z|1|A|G|2219
7M4Z|1|A|G|2220
7M4Z|1|A|A|2221
7M4Z|1|A|C|2222
7M4Z|1|A|C|2223
7M4Z|1|A|G|2224

Current chains

Chain A

23s ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain H

50S ribosomal protein L9

Chain W

50S ribosomal protein L28