J3_7M4Z_026

3D structure

PDB id

7M4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-Eravacycline complex: 70S with hpf

Experimental method

ELECTRON MICROSCOPY

Resolution

2.92 Å

Loop

Sequence

GC*GCGAAAAGAAC*GAGUGAAAUAGAUCC

Length

28 nucleotides

Bulged bases

7M4Z|1|A|U|503, 7M4Z|1|A|U|507

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7M4Z_026 not in the Motif Atlas

Homologous match to J3_4WF9_011

Geometric discrepancy: 0.244

The information below is about J3_4WF9_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17917.1

Basepair signature

cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F

Number of instances in this motif group

9

Unit IDs

7M4Z|1|A|G|37
7M4Z|1|A|C|38
*
7M4Z|1|A|G|473
7M4Z|1|A|C|474
7M4Z|1|A|G|475
7M4Z|1|A|A|476
7M4Z|1|A|A|477
7M4Z|1|A|A|478
7M4Z|1|A|A|479
7M4Z|1|A|G|480
7M4Z|1|A|A|481
7M4Z|1|A|A|482
7M4Z|1|A|C|483
*
7M4Z|1|A|G|495
7M4Z|1|A|A|496
7M4Z|1|A|G|497
7M4Z|1|A|U|498
7M4Z|1|A|G|499
7M4Z|1|A|A|500
7M4Z|1|A|A|501
7M4Z|1|A|A|502
7M4Z|1|A|U|503
7M4Z|1|A|A|504
7M4Z|1|A|G|505
7M4Z|1|A|A|506
7M4Z|1|A|U|507
7M4Z|1|A|C|508
7M4Z|1|A|C|509

Current chains

Chain A

23s ribosomal RNA

Nearby chains

Chain P

50S ribosomal protein L20

Chain R

50S ribosomal protein L22

Chain T

50S ribosomal protein L24