J3_7M4Z_028

3D structure

PDB id

7M4Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

A. baumannii Ribosome-Eravacycline complex: 70S with hpf

Experimental method

ELECTRON MICROSCOPY

Resolution

2.92 Å

Loop

Sequence

AGGACG*CC*GAAAAGU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7M4Z_028 not in the Motif Atlas

Homologous match to J3_7A0S_019

Geometric discrepancy: 0.1099

The information below is about J3_7A0S_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.3

Basepair signature

cWW-tSH-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

7M4Z|1|A|A|1419
7M4Z|1|A|G|1420
7M4Z|1|A|G|1421
7M4Z|1|A|A|1422
7M4Z|1|A|C|1423
7M4Z|1|A|G|1424
*
7M4Z|1|A|C|1562
7M4Z|1|A|C|1563
*
7M4Z|1|A|G|1566
7M4Z|1|A|A|1567
7M4Z|1|A|A|1568
7M4Z|1|A|A|1569
7M4Z|1|A|A|1570
7M4Z|1|A|G|1571
7M4Z|1|A|U|1572

Current chains

Chain A

23s ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2