J3_7M5D_017

3D structure

PDB id

7M5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a non-rotated E.coli 70S ribosome in complex with RF3-GTP, RF1 and P-tRNA (state I)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

7M5D|1|2|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7M5D_017 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.0982

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

7M5D|1|2|C|826
7M5D|1|2|U|827
7M5D|1|2|U|828
7M5D|1|2|G|829
*
7M5D|1|2|C|857
7M5D|1|2|G|858
7M5D|1|2|G|859
7M5D|1|2|A|860
7M5D|1|2|G|861
*
7M5D|1|2|C|868
7M5D|1|2|G|869
7M5D|1|2|U|870
7M5D|1|2|U|871
7M5D|1|2|A|872
7M5D|1|2|A|873
7M5D|1|2|G|874

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain g

30S ribosomal protein S2

Chain m

30S ribosomal protein S8

Chain z

30S ribosomal protein S21