J3_7M5D_025

3D structure

PDB id

7M5D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a non-rotated E.coli 70S ribosome in complex with RF3-GTP, RF1 and P-tRNA (state I)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

7M5D|1|2|U|1240, 7M5D|1|2|C|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7M5D_025 not in the Motif Atlas

Homologous match to J3_4LFB_009

Geometric discrepancy: 0.1567

The information below is about J3_4LFB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

7M5D|1|2|C|1237
7M5D|1|2|A|1238
7M5D|1|2|A|1239
7M5D|1|2|U|1240
7M5D|1|2|G|1241
*
7M5D|1|2|C|1296
7M5D|1|2|G|1297
7M5D|1|2|U|1298
7M5D|1|2|A|1299
7M5D|1|2|G|1300
7M5D|1|2|U|1301
7M5D|1|2|C|1302
7M5D|1|2|C|1303
*
7M5D|1|2|G|1334
7M5D|1|2|U|1335
7M5D|1|2|C|1336
7M5D|1|2|G|1337

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain l

30S ribosomal protein S7

Chain r

30S ribosomal protein S13