J3_7MD7_045

3D structure

PDB id

7MD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with triphenylphosphonium analog of chloramphenicol CAM-C4-TPP and protein Y (YfiA) at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUAG*CGAAG*CGUUAAG

Length

16 nucleotides

Bulged bases

7MD7|1|2a|U|871, 7MD7|1|2a|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7MD7_045 not in the Motif Atlas

Homologous match to J3_6CZR_018

Geometric discrepancy: 0.1267

The information below is about J3_6CZR_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.3

Basepair signature

cWW-tSH-F-tWW-tHS-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

7MD7|1|2a|C|826
7MD7|1|2a|U|827
7MD7|1|2a|A|828
7MD7|1|2a|G|829
*
7MD7|1|2a|C|857
7MD7|1|2a|G|858
7MD7|1|2a|A|859
7MD7|1|2a|A|860
7MD7|1|2a|G|861
*
7MD7|1|2a|C|868
7MD7|1|2a|G|869
7MD7|1|2a|U|870
7MD7|1|2a|U|871
7MD7|1|2a|A|872
7MD7|1|2a|A|873
7MD7|1|2a|G|874

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2b

30S ribosomal protein S2

Chain 2h

30S ribosomal protein S8