J3_7MD7_054

3D structure

PDB id

7MD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with triphenylphosphonium analog of chloramphenicol CAM-C4-TPP and protein Y (YfiA) at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CAAUG*CCCAGUUC*GCCG

Length

17 nucleotides

Bulged bases

7MD7|1|2a|U|1240

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7MD7_054 not in the Motif Atlas

Homologous match to J3_5J7L_011

Geometric discrepancy: 0.1689

The information below is about J3_5J7L_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

7MD7|1|2a|C|1237
7MD7|1|2a|A|1238
7MD7|1|2a|A|1239
7MD7|1|2a|U|1240
7MD7|1|2a|G|1241
*
7MD7|1|2a|C|1296
7MD7|1|2a|C|1297
7MD7|1|2a|C|1298
7MD7|1|2a|A|1299
7MD7|1|2a|G|1300
7MD7|1|2a|U|1301
7MD7|1|2a|U|1302
7MD7|1|2a|C|1303
*
7MD7|1|2a|G|1334
7MD7|1|2a|C|1335
7MD7|1|2a|C|1336
7MD7|1|2a|G|1337

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2g

30S ribosomal protein S7

Chain 2m

30S ribosomal protein S13

Chain 2u

30S ribosomal protein Thx