J3_7MD7_071

3D structure

PDB id

7MD7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with triphenylphosphonium analog of chloramphenicol CAM-C4-TPP and protein Y (YfiA) at 2.80A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

7MD7|1|2a|C|1214

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7MD7_071 not in the Motif Atlas

Homologous match to J3_4LFB_016

Geometric discrepancy: 0.1497

The information below is about J3_4LFB_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_28881.1

Basepair signature

cWW-tWH-F-F-cWW-cWW-F-F-F-cWS-cWW

Number of instances in this motif group

2

Unit IDs

7MD7|1|2a|C|990
7MD7|1|2a|U|991
7MD7|1|2a|U|992
7MD7|1|2a|G|993
7MD7|1|2a|A|994
7MD7|1|2a|C|995
7MD7|1|2a|A|996
7MD7|1|2a|U|997
*
7MD7|1|2a|A|1044
7MD7|1|2a|C|1045
7MD7|1|2a|A|1046
7MD7|1|2a|G|1047
*
7MD7|1|2a|C|1210
7MD7|1|2a|U|1211
7MD7|1|2a|U|1212
7MD7|1|2a|A|1213
7MD7|1|2a|C|1214
7MD7|1|2a|G|1215

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2n

30S ribosomal protein S14 type Z