J3_7MDZ_014
3D structure
- PDB id
- 7MDZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S rabbit ribosome stalled with benzamide-CHX
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CUC*GAG*CAAAAG
- Length
- 12 nucleotides
- Bulged bases
- 7MDZ|1|5|A|4280
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7MDZ_014 not in the Motif Atlas
- Homologous match to J3_5TBW_013
- Geometric discrepancy: 0.1073
- The information below is about J3_5TBW_013
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91491.5
- Basepair signature
- cWW-F-tWW-tHW-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
7MDZ|1|5|C|4241
7MDZ|1|5|U|4242
7MDZ|1|5|C|4243
*
7MDZ|1|5|G|4267
7MDZ|1|5|A|4268
7MDZ|1|5|G|4269
*
7MDZ|1|5|C|4278
7MDZ|1|5|A|4279
7MDZ|1|5|A|4280
7MDZ|1|5|A|4281
7MDZ|1|5|A|4282
7MDZ|1|5|G|4283
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 2
- Transfer RNA; tRNA
- Chain 7
- 5S ribosomal RNA; 5S rRNA
- Chain D
- Ribosomal_L18_c domain-containing protein
- Chain J
- 60S ribosomal protein L11
- Chain T
- eL21
- Chain o
- eL42
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