3D structure

PDB id
7MDZ (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S rabbit ribosome stalled with benzamide-CHX
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
UAUC*GUU*ACUAAUA
Length
14 nucleotides
Bulged bases
7MDZ|1|5|A|4464, 7MDZ|1|5|U|4465
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7MDZ_015 not in the Motif Atlas
Homologous match to J3_5TBW_014
Geometric discrepancy: 0.112
The information below is about J3_5TBW_014
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_98597.1
Basepair signature
cWW-tWW-cHW-tSH-cWW-tSS-F-cSS-cWW
Number of instances in this motif group
2

Unit IDs

7MDZ|1|5|U|4463
7MDZ|1|5|A|4464
7MDZ|1|5|U|4465
7MDZ|1|5|C|4466
*
7MDZ|1|5|G|4491
7MDZ|1|5|U|4492
7MDZ|1|5|U|4493
*
7MDZ|1|5|A|4507
7MDZ|1|5|C|4508
7MDZ|1|5|U|4509
7MDZ|1|5|A|4510
7MDZ|1|5|A|4511
7MDZ|1|5|U|4512
7MDZ|1|5|A|4513

Current chains

Chain 5
28S rRNA

Nearby chains

Chain B
uL3
Chain V
Ribosomal protein L23

Coloring options:


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