J3_7MDZ_023

3D structure

PDB id

7MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S rabbit ribosome stalled with benzamide-CHX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCAG*CCAGUAA*UGAUUAAG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7MDZ_023 not in the Motif Atlas

Homologous match to J3_4V88_035

Geometric discrepancy: 0.1395

The information below is about J3_4V88_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.1

Basepair signature

cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

7MDZ|1|9|C|1218
7MDZ|1|9|C|1219
7MDZ|1|9|A|1220
7MDZ|1|9|G|1221
*
7MDZ|1|9|C|1645
7MDZ|1|9|C|1646
7MDZ|1|9|A|1647
7MDZ|1|9|G|1648
7MDZ|1|9|U|1649
7MDZ|1|9|A|1650
7MDZ|1|9|A|1651
*
7MDZ|1|9|U|1673
7MDZ|1|9|G|1674
7MDZ|1|9|A|1675
7MDZ|1|9|U|1676
7MDZ|1|9|U|1677
7MDZ|1|9|A|1678
7MDZ|1|9|A|1679
7MDZ|1|9|G|1680

Current chains

Chain 9

18S rRNA

Nearby chains

Chain FF

uS7

Chain QQ

uS9

Chain cc

eS28