J3_7MDZ_026

3D structure

PDB id

7MDZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S rabbit ribosome stalled with benzamide-CHX

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCGGAC*GGGUG*UUAGAUG

Length

18 nucleotides

Bulged bases

7MDZ|1|9|G|1274, 7MDZ|1|9|G|1507, 7MDZ|1|9|U|1509

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7MDZ_026 not in the Motif Atlas

Homologous match to J3_4V88_038

Geometric discrepancy: 0.1478

The information below is about J3_4V88_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_75993.1

Basepair signature

cWW-tWH-F-F-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

2

Unit IDs

7MDZ|1|9|C|1272
7MDZ|1|9|C|1273
7MDZ|1|9|G|1274
7MDZ|1|9|G|1275
7MDZ|1|9|A|1276
7MDZ|1|9|C|1277
*
7MDZ|1|9|G|1320
7MDZ|1|9|G|1321
7MDZ|1|9|G|1322
7MDZ|1|9|U|1323
7MDZ|1|9|G|1324
*
7MDZ|1|9|U|1504
7MDZ|1|9|U|1505
7MDZ|1|9|A|1506
7MDZ|1|9|G|1507
7MDZ|1|9|A|1508
7MDZ|1|9|U|1509
7MDZ|1|9|G|1510

Current chains

Chain 9

18S rRNA

Nearby chains

Chain KK

S10_plectin domain-containing protein

Chain dd

eS29

Chain ff

eS31