J3_7MPI_017

3D structure

PDB id

7MPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

AG*CGC(A2M)AAU*AGU

Length

12 nucleotides

Bulged bases

7MPI|1|B5|C|435

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7MPI_017 not in the Motif Atlas

Geometric match to J3_8C3A_082

Geometric discrepancy: 0.1029

The information below is about J3_8C3A_082

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_67856.2

Basepair signature

cWW-F-cWW-F-F-cSW-F-cWW

Number of instances in this motif group

5

Unit IDs

7MPI|1|B5|A|41
7MPI|1|B5|G|42
*
7MPI|1|B5|C|433
7MPI|1|B5|G|434
7MPI|1|B5|C|435
7MPI|1|B5|A2M|436
7MPI|1|B5|A|437
7MPI|1|B5|A|438
7MPI|1|B5|U|439
*
7MPI|1|B5|A|464
7MPI|1|B5|G|465
7MPI|1|B5|U|466

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BJ

40S ribosomal protein S9-A

Chain BX

40S ribosomal protein S23-A