3D structure

PDB id
7MPI (explore in PDB, NAKB, or RNA 3D Hub)
Description
Stm1 bound vacant 80S structure isolated from cbf5-D95A
Experimental method
ELECTRON MICROSCOPY
Resolution
3.05 Å

Loop

Sequence
CUA*UUACG*CAAAG
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7MPI_021 not in the Motif Atlas
Homologous match to J3_8C3A_037
Geometric discrepancy: 0.164
The information below is about J3_8C3A_037
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_95208.1
Basepair signature
cWW-tWW-tWW-F-cWW-F-cWW
Number of instances in this motif group
2

Unit IDs

7MPI|1|B5|C|1037
7MPI|1|B5|U|1038
7MPI|1|B5|A|1039
*
7MPI|1|B5|U|1079
7MPI|1|B5|U|1080
7MPI|1|B5|A|1081
7MPI|1|B5|C|1082
7MPI|1|B5|G|1083
*
7MPI|1|B5|C|1090
7MPI|1|B5|A|1091
7MPI|1|B5|A|1092
7MPI|1|B5|A|1093
7MPI|1|B5|G|1094

Current chains

Chain B5
18S rRNA

Nearby chains

Chain BA
40S ribosomal protein S0-A
Chain BV
40S ribosomal protein S21-A
Chain BW
40S ribosomal protein S22-A
Chain Ba
40S ribosomal protein S26-B
Chain Bb
40S ribosomal protein S27-A

Coloring options:


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