J3_7MPI_037

3D structure

PDB id

7MPI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from cbf5-D95A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

AGACG*CC*GAAAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7MPI_037 not in the Motif Atlas

Homologous match to J3_8P9A_058

Geometric discrepancy: 0.0775

The information below is about J3_8P9A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_12393.2

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

7MPI|1|A1|A|1654
7MPI|1|A1|G|1655
7MPI|1|A1|A|1656
7MPI|1|A1|C|1657
7MPI|1|A1|G|1658
*
7MPI|1|A1|C|1791
7MPI|1|A1|C|1792
*
7MPI|1|A1|G|1796
7MPI|1|A1|A|1797
7MPI|1|A1|A|1798
7MPI|1|A1|A|1799
7MPI|1|A1|A|1800
7MPI|1|A1|U|1801

Current chains

Chain A1

25S rRNA

Nearby chains

Chain AA

60S ribosomal protein L2-A

Chain Ag

60S ribosomal protein L34-A

Chain Ap

60S ribosomal protein L43-A