3D structure

PDB id
7MPJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Stm1 bound vacant 80S structure isolated from nop1-D243A
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
CA*UAACU*AG
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7MPJ_009 not in the Motif Atlas
Homologous match to J3_8C3A_054
Geometric discrepancy: 0.1211
The information below is about J3_8C3A_054
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_16991.1
Basepair signature
cWW-F-cWW-F-F-cWW
Number of instances in this motif group
3

Unit IDs

7MPJ|1|A1|C|1631
7MPJ|1|A1|A|1632
*
7MPJ|1|A1|U|1641
7MPJ|1|A1|A|1642
7MPJ|1|A1|A|1643
7MPJ|1|A1|C|1644
7MPJ|1|A1|U|1645
*
7MPJ|1|A1|A|1810
7MPJ|1|A1|G|1811

Current chains

Chain A1
25S rRNA

Nearby chains

Chain AZ
60S ribosomal protein L27-A
Chain Ag
60S ribosomal protein L34-A
Chain Ak
60S ribosomal protein L38

Coloring options:


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