J3_7MPJ_018
3D structure
- PDB id
- 7MPJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Stm1 bound vacant 80S structure isolated from nop1-D243A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AUCA*UAACUACUG*CAUUU
- Length
- 18 nucleotides
- Bulged bases
- 7MPJ|1|B5|C|934
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7MPJ_018 not in the Motif Atlas
- Homologous match to J3_8P9A_074
- Geometric discrepancy: 0.0749
- The information below is about J3_8P9A_074
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76375.1
- Basepair signature
- cWW-F-cWW-F-cWW-F-cWW-F-tWW-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
7MPJ|1|B5|A|881
7MPJ|1|B5|U|882
7MPJ|1|B5|C|883
7MPJ|1|B5|A|884
*
7MPJ|1|B5|U|928
7MPJ|1|B5|A|929
7MPJ|1|B5|A|930
7MPJ|1|B5|C|931
7MPJ|1|B5|U|932
7MPJ|1|B5|A|933
7MPJ|1|B5|C|934
7MPJ|1|B5|U|935
7MPJ|1|B5|G|936
*
7MPJ|1|B5|C|943
7MPJ|1|B5|A|944
7MPJ|1|B5|U|945
7MPJ|1|B5|U|946
7MPJ|1|B5|U|947
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain Ap
- 60S ribosomal protein L43-A
- Chain BB
- 40S ribosomal protein S1-A
- Chain BN
- 40S ribosomal protein S13
- Chain BO
- 40S ribosomal protein S14-A
- Chain Ba
- 40S ribosomal protein S26-A
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