J3_7MPJ_021
3D structure
- PDB id
- 7MPJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Stm1 bound vacant 80S structure isolated from nop1-D243A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UGGA*UAC*G(G7M)AA
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: G7M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7MPJ_021 not in the Motif Atlas
- Homologous match to J3_8C3A_039
- Geometric discrepancy: 0.0996
- The information below is about J3_8C3A_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_52655.3
- Basepair signature
- cWW-tSH-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
7MPJ|1|B5|U|1168
7MPJ|1|B5|G|1169
7MPJ|1|B5|G|1170
7MPJ|1|B5|A|1171
*
7MPJ|1|B5|U|1468
7MPJ|1|B5|A|1469
7MPJ|1|B5|C|1470
*
7MPJ|1|B5|G|1574
7MPJ|1|B5|G7M|1575
7MPJ|1|B5|A|1576
7MPJ|1|B5|A|1577
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BF
- 40S ribosomal protein S5
- Chain BQ
- 40S ribosomal protein S16-A
- Chain BS
- 40S ribosomal protein S18-A
- Chain BT
- 40S ribosomal protein S19-A
Coloring options: