J3_7MPJ_023
3D structure
- PDB id
- 7MPJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Stm1 bound vacant 80S structure isolated from nop1-D243A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CCAGAC*GGGUG*UUAGACG
- Length
- 18 nucleotides
- Bulged bases
- 7MPJ|1|B5|A|1217, 7MPJ|1|B5|G|1445
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7MPJ_023 not in the Motif Atlas
- Homologous match to J3_8C3A_041
- Geometric discrepancy: 0.1167
- The information below is about J3_8C3A_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_23728.1
- Basepair signature
- cWW-tWH-F-F-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 2
Unit IDs
7MPJ|1|B5|C|1215
7MPJ|1|B5|C|1216
7MPJ|1|B5|A|1217
7MPJ|1|B5|G|1218
7MPJ|1|B5|A|1219
7MPJ|1|B5|C|1220
*
7MPJ|1|B5|G|1263
7MPJ|1|B5|G|1264
7MPJ|1|B5|G|1265
7MPJ|1|B5|U|1266
7MPJ|1|B5|G|1267
*
7MPJ|1|B5|U|1442
7MPJ|1|B5|U|1443
7MPJ|1|B5|A|1444
7MPJ|1|B5|G|1445
7MPJ|1|B5|A|1446
7MPJ|1|B5|C|1447
7MPJ|1|B5|G|1448
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BK
- 40S ribosomal protein S10-A
- Chain Bd
- 40S ribosomal protein S29-A
- Chain Bf
- 40S ribosomal protein S31
Coloring options: