J3_7MPJ_042

3D structure

PDB id

7MPJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Stm1 bound vacant 80S structure isolated from nop1-D243A

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

AGAUUAAG*CGCGC(A2M)AAU*AG(PSU)

Length

20 nucleotides

Bulged bases

7MPJ|1|B5|A|47

QA status

Modified nucleotides: A2M, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7MPJ_042 not in the Motif Atlas

Homologous match to J3_8P9A_069

Geometric discrepancy: 0.1266

The information below is about J3_8P9A_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7MPJ|1|B5|A|41
7MPJ|1|B5|G|42
7MPJ|1|B5|A|43
7MPJ|1|B5|U|44
7MPJ|1|B5|U|45
7MPJ|1|B5|A|46
7MPJ|1|B5|A|47
7MPJ|1|B5|G|48
*
7MPJ|1|B5|C|431
7MPJ|1|B5|G|432
7MPJ|1|B5|C|433
7MPJ|1|B5|G|434
7MPJ|1|B5|C|435
7MPJ|1|B5|A2M|436
7MPJ|1|B5|A|437
7MPJ|1|B5|A|438
7MPJ|1|B5|U|439
*
7MPJ|1|B5|A|464
7MPJ|1|B5|G|465
7MPJ|1|B5|PSU|466

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BJ

40S ribosomal protein S9-A

Chain BX

40S ribosomal protein S23-A