J3_7MPJ_042
3D structure
- PDB id
- 7MPJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Stm1 bound vacant 80S structure isolated from nop1-D243A
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AGAUUAAG*CGCGC(A2M)AAU*AG(PSU)
- Length
- 20 nucleotides
- Bulged bases
- 7MPJ|1|B5|A|47
- QA status
- Modified nucleotides: A2M, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7MPJ_042 not in the Motif Atlas
- Homologous match to J3_8P9A_069
- Geometric discrepancy: 0.1266
- The information below is about J3_8P9A_069
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_46317.4
- Basepair signature
- cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
7MPJ|1|B5|A|41
7MPJ|1|B5|G|42
7MPJ|1|B5|A|43
7MPJ|1|B5|U|44
7MPJ|1|B5|U|45
7MPJ|1|B5|A|46
7MPJ|1|B5|A|47
7MPJ|1|B5|G|48
*
7MPJ|1|B5|C|431
7MPJ|1|B5|G|432
7MPJ|1|B5|C|433
7MPJ|1|B5|G|434
7MPJ|1|B5|C|435
7MPJ|1|B5|A2M|436
7MPJ|1|B5|A|437
7MPJ|1|B5|A|438
7MPJ|1|B5|U|439
*
7MPJ|1|B5|A|464
7MPJ|1|B5|G|465
7MPJ|1|B5|PSU|466
Current chains
- Chain B5
- 18S rRNA
Nearby chains
- Chain BJ
- 40S ribosomal protein S9-A
- Chain BX
- 40S ribosomal protein S23-A
Coloring options: