3D structure

PDB id
7MPJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Stm1 bound vacant 80S structure isolated from nop1-D243A
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
AGAUUAAG*CGCGC(A2M)AAU*AG(PSU)
Length
20 nucleotides
Bulged bases
7MPJ|1|B5|A|47
QA status
Modified nucleotides: A2M, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_7MPJ_042 not in the Motif Atlas
Homologous match to J3_8P9A_069
Geometric discrepancy: 0.1266
The information below is about J3_8P9A_069
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_46317.4
Basepair signature
cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F
Number of instances in this motif group
4

Unit IDs

7MPJ|1|B5|A|41
7MPJ|1|B5|G|42
7MPJ|1|B5|A|43
7MPJ|1|B5|U|44
7MPJ|1|B5|U|45
7MPJ|1|B5|A|46
7MPJ|1|B5|A|47
7MPJ|1|B5|G|48
*
7MPJ|1|B5|C|431
7MPJ|1|B5|G|432
7MPJ|1|B5|C|433
7MPJ|1|B5|G|434
7MPJ|1|B5|C|435
7MPJ|1|B5|A2M|436
7MPJ|1|B5|A|437
7MPJ|1|B5|A|438
7MPJ|1|B5|U|439
*
7MPJ|1|B5|A|464
7MPJ|1|B5|G|465
7MPJ|1|B5|PSU|466

Current chains

Chain B5
18S rRNA

Nearby chains

Chain BJ
40S ribosomal protein S9-A
Chain BX
40S ribosomal protein S23-A

Coloring options:


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