J3_7MQ8_011
3D structure
- PDB id
- 7MQ8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human SSU processome, state pre-A1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CCAG*CCAGUAA*UGAUUAAG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7MQ8_011 not in the Motif Atlas
- Homologous match to J3_8C3A_038
- Geometric discrepancy: 0.2635
- The information below is about J3_8C3A_038
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_25303.2
- Basepair signature
- cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
7MQ8|1|L1|C|1218
7MQ8|1|L1|C|1219
7MQ8|1|L1|A|1220
7MQ8|1|L1|G|1221
*
7MQ8|1|L1|C|1645
7MQ8|1|L1|C|1646
7MQ8|1|L1|A|1647
7MQ8|1|L1|G|1648
7MQ8|1|L1|U|1649
7MQ8|1|L1|A|1650
7MQ8|1|L1|A|1651
*
7MQ8|1|L1|U|1673
7MQ8|1|L1|G|1674
7MQ8|1|L1|A|1675
7MQ8|1|L1|U|1676
7MQ8|1|L1|U|1677
7MQ8|1|L1|A|1678
7MQ8|1|L1|A|1679
7MQ8|1|L1|G|1680
Current chains
- Chain L1
- 18S rRNA
Nearby chains
- Chain L5
- 40S ribosomal protein S5
- Chain LC
- 40S ribosomal protein S16
- Chain LG
- 40S ribosomal protein S28
- Chain LO
- Periodic tryptophan protein 2 homolog
- Chain SM
- U3 small nucleolar ribonucleoprotein protein IMP4
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