J3_7MQA_015
3D structure
- PDB id
- 7MQA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the human SSU processome, state post-A1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AUUC*GGACCAGAG*CAUU(PSU)
- Length
- 18 nucleotides
- Bulged bases
- 7MQA|1|L1|G|991
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_7MQA_015 not in the Motif Atlas
- Homologous match to J3_8P9A_074
- Geometric discrepancy: 0.2618
- The information below is about J3_8P9A_074
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_23895.1
- Basepair signature
- cWW-cWW-cWW-cWW-tWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
7MQA|1|L1|A|938
7MQA|1|L1|U|939
7MQA|1|L1|U|940
7MQA|1|L1|C|941
*
7MQA|1|L1|G|985
7MQA|1|L1|G|986
7MQA|1|L1|A|987
7MQA|1|L1|C|988
7MQA|1|L1|C|989
7MQA|1|L1|A|990
7MQA|1|L1|G|991
7MQA|1|L1|A|992
7MQA|1|L1|G|993
*
7MQA|1|L1|C|1000
7MQA|1|L1|A|1001
7MQA|1|L1|U|1002
7MQA|1|L1|U|1003
7MQA|1|L1|PSU|1004
Current chains
- Chain L1
- 18S rRNA
Nearby chains
- Chain LW
- WD repeat-containing protein 46
- Chain NF
- 40S ribosomal protein S13
- Chain NG
- 40S ribosomal protein S14
- Chain NM
- 40S ribosomal protein S3a
- Chain SW
- RNA-binding protein PNO1
Coloring options: