J3_7MSM_012

3D structure

PDB id

7MSM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mtb 70SIC in complex with MtbEttA at Trans_R0 state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.79 Å

Loop

Sequence

UUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7MSM_012 not in the Motif Atlas

Homologous match to J3_5J7L_044

Geometric discrepancy: 0.1136

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn in J3

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

7MSM|1|A|U|2328
7MSM|1|A|U|2329
7MSM|1|A|G|2330
*
7MSM|1|A|C|2433
7MSM|1|A|U|2434
7MSM|1|A|A|2435
7MSM|1|A|A|2436
7MSM|1|A|C|2437
*
7MSM|1|A|G|2461
7MSM|1|A|G|2462
7MSM|1|A|A|2463
7MSM|1|A|C|2464
7MSM|1|A|A|2465
7MSM|1|A|G|2466

Current chains

Chain A

23S rRNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain H

50S ribosomal protein L9

Chain X

50S ribosomal protein L28