J3_7N1P_004

3D structure

PDB id

7N1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating 70S ribosome complex in a classical pre-translocation (PRE-C) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

7N1P|1|16|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7N1P_004 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.0492

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

7N1P|1|16|C|826
7N1P|1|16|U|827
7N1P|1|16|U|828
7N1P|1|16|G|829
*
7N1P|1|16|C|857
7N1P|1|16|G|858
7N1P|1|16|G|859
7N1P|1|16|A|860
7N1P|1|16|G|861
*
7N1P|1|16|C|868
7N1P|1|16|G|869
7N1P|1|16|U|870
7N1P|1|16|U|871
7N1P|1|16|A|872
7N1P|1|16|A|873
7N1P|1|16|G|874

Current chains

Chain 16

16S rRNA

Nearby chains

Chain SB

30S ribosomal protein S2

Chain SH

30S ribosomal protein S8

Chain SU

30S ribosomal protein S21