J3_7N1P_013

3D structure

PDB id

7N1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating 70S ribosome complex in a classical pre-translocation (PRE-C) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

CAAUG*CGUAGUCC*GUCG

Length

17 nucleotides

Bulged bases

7N1P|1|16|U|1240, 7N1P|1|16|C|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7N1P_013 not in the Motif Atlas

Homologous match to J3_5J7L_011

Geometric discrepancy: 0.2202

The information below is about J3_5J7L_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37047.6

Basepair signature

cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F

Number of instances in this motif group

4

Unit IDs

7N1P|1|16|C|1237
7N1P|1|16|A|1238
7N1P|1|16|A|1239
7N1P|1|16|U|1240
7N1P|1|16|G|1241
*
7N1P|1|16|C|1296
7N1P|1|16|G|1297
7N1P|1|16|U|1298
7N1P|1|16|A|1299
7N1P|1|16|G|1300
7N1P|1|16|U|1301
7N1P|1|16|C|1302
7N1P|1|16|C|1303
*
7N1P|1|16|G|1334
7N1P|1|16|U|1335
7N1P|1|16|C|1336
7N1P|1|16|G|1337

Current chains

Chain 16

16S rRNA

Nearby chains

Chain SG

30S ribosomal protein S7

Chain SM

30S ribosomal protein S13