J3_7N1P_028

3D structure

PDB id

7N1P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating 70S ribosome complex in a classical pre-translocation (PRE-C) conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

GCCUAAC*GGGGAAUAU*AGC

Length

19 nucleotides

Bulged bases

7N1P|1|16|C|48, 7N1P|1|16|A|51

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7N1P_028 not in the Motif Atlas

Homologous match to J3_5J7L_050

Geometric discrepancy: 0.06

The information below is about J3_5J7L_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46317.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-F-F-F-cWW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7N1P|1|16|G|46
7N1P|1|16|C|47
7N1P|1|16|C|48
7N1P|1|16|U|49
7N1P|1|16|A|50
7N1P|1|16|A|51
7N1P|1|16|C|52
*
7N1P|1|16|G|359
7N1P|1|16|G|360
7N1P|1|16|G|361
7N1P|1|16|G|362
7N1P|1|16|A|363
7N1P|1|16|A|364
7N1P|1|16|U|365
7N1P|1|16|A|366
7N1P|1|16|U|367
*
7N1P|1|16|A|393
7N1P|1|16|G|394
7N1P|1|16|C|395

Current chains

Chain 16

16S rRNA

Nearby chains

Chain SL

30S ribosomal protein S12

Chain SP

30S ribosomal protein S16