J3_7N2V_004

3D structure

PDB id

7N2V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating 70S ribosome complex in a spectinomycin-stalled intermediate state of translocation bound to EF-G in an active, GTP conformation (INT1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

7N2V|1|16|U|871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_7N2V_004 not in the Motif Atlas

Homologous match to J3_5J7L_004

Geometric discrepancy: 0.0689

The information below is about J3_5J7L_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.4

Basepair signature

cWW-tWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

3

Unit IDs

7N2V|1|16|C|826
7N2V|1|16|U|827
7N2V|1|16|U|828
7N2V|1|16|G|829
*
7N2V|1|16|C|857
7N2V|1|16|G|858
7N2V|1|16|G|859
7N2V|1|16|A|860
7N2V|1|16|G|861
*
7N2V|1|16|C|868
7N2V|1|16|G|869
7N2V|1|16|U|870
7N2V|1|16|U|871
7N2V|1|16|A|872
7N2V|1|16|A|873
7N2V|1|16|G|874

Current chains

Chain 16

16S rRNA

Nearby chains

Chain SB

30S ribosomal protein S2

Chain SH

30S ribosomal protein S8

Chain SU

30S ribosomal protein S21